miRBase entry: nbr-mir-29b

Stem-loop nbr-mir-29b

Accession

MI0034464

Description

Neolamprologus brichardi nbr-mir-29b precursor miRNA

Sequence

agcugguuucagaugguggcuuagaguauugucaucuaucUAGCACCAUUUGAAAUCAGUGUU
.(((((((((((((((((.((((((.........))))...)))))))))))))))))))...

Structure

--a                 g  ---    gua 
   gcugguuucagauggug cu   uaga   u
   ||||||||||||||||| ||   ||||   u
   UGACUAAAGUUUACCAC GA   aucu   g
UUG                 -  Ucu    acu

Annotation confidence Not enough data

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Genome context

JH422304.1: 2584042-2584104 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-29b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-29b

Accession	MIMAT0042585
Description	Neolamprologus brichardi nbr-miR-29b mature miRNA
Sequence	41 - UAGCACCAUUUGAAAUCAGUGUU - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381