miRBase entry: nbr-mir-18b

Stem-loop nbr-mir-18b

Accession

MI0034473

Description

Neolamprologus brichardi nbr-mir-18b precursor miRNA

Sequence

UAAGGUGCAUCUAGUGUAGUUAgugaaguauucaaagucuacugcccuaguugccccuucugucu
.((((.(((.((((.(((((...((((...))))......))))).)))).))).))))......

Structure

-----U    U   U    U     ---UAg    g 
      AAGG GCA CUAG GUAGU      ugaa  
      |||| ||| |||| |||||      |||| u
      uucc cgu gauc cguca      acuu  
ucuguc    c   u    c     ucugaa    a

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH422275.1: 13783295-13783359 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-18b

Accession	MIMAT0042594
Description	Neolamprologus brichardi nbr-miR-18b mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGUAGUUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381