miRBase entry: nbr-mir-23c

Stem-loop nbr-mir-23c

Accession

MI0034477

Description

Neolamprologus brichardi nbr-mir-23c precursor miRNA

Sequence

ugugucucuggcaagaugauuugggccacaaaguugaaAUCACAUUGCCAGAGAUUACUG
.(((((((((((((..((((((.(((......))).))))))..)))))))))).)))..

Structure

-u   -          ga      g   ca 
  gug ucucuggcaa  ugauuu ggc  c
  ||| ||||||||||  |||||| |||   
  CAU AGAGACCGUU  ACUAaa uug  a
GU   U          AC      g   aa

Annotation confidence Not enough data

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Genome context

JH422376.1: 819474-819533 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-23c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-23c

Accession	MIMAT0042597
Description	Neolamprologus brichardi nbr-miR-23c mature miRNA
Sequence	39 - AUCACAUUGCCAGAGAUUACUG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381