miRBase entry: nbr-mir-15c

Stem-loop nbr-mir-15c

Accession

MI0034487

Description

Neolamprologus brichardi nbr-mir-15c precursor miRNA

Sequence

UAGCAGCACAUCAUGUUUUGCagaugugcugaauggcuuCAAAUCAUCAUGUGCUGCCACu
..(((((((((.(((.((((.((..((.....))..)).)))).))).)))))))))....

Structure

--UA         C   U    C  au  g 
    GCAGCACAU AUG UUUG ag  gu c
    ||||||||| ||| |||| ||  || u
    CGUCGUGUA UAC AAAC uc  ua g
uCAC         C   U    u  gg  a

Annotation confidence Not enough data

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Genome context

JH422539.1: 153651-153711 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-15c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-15c-5p

Accession	MIMAT0042606
Description	Neolamprologus brichardi nbr-miR-15c-5p mature miRNA
Sequence	1 - UAGCAGCACAUCAUGUUUUGC - 21
Evidence	experimental Illumina [1]

Mature nbr-miR-15c-3p

Accession	MIMAT0042607
Description	Neolamprologus brichardi nbr-miR-15c-3p mature miRNA
Sequence	40 - CAAAUCAUCAUGUGCUGCCAC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381