miRBase entry: nbr-mir-15b

Stem-loop nbr-mir-15b


Accession
MI0034496
Description
Neolamprologus brichardi nbr-mir-15b precursor miRNA


Sequence

UAGCAGCGCAUCAUGGUUUGAaacaauguggaaaaggugcgaaccauaauuugcugcuuu
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))..

Structure
-U       C  C        Aa  aa gu 
  AGCAGCG AU AUGGUUUG  ac  u  g
  ||||||| || ||||||||  ||  |   
  ucgucgu ua uaccaagc  ug  a  g
uu       u  a        -g  ga aa 


Annotation confidence Not enough data
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Genome context
JH422310.1: 1071306-1071365 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-15b

Accession MIMAT0042617
Description Neolamprologus brichardi nbr-miR-15b mature miRNA
Sequence 1 - UAGCAGCGCAUCAUGGUUUGA - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381