miRBase entry: nbr-mir-212a

Stem-loop nbr-mir-212a


Accession
MI0034498
Description
Neolamprologus brichardi nbr-mir-212a precursor miRNA


Sequence

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacaguaacagucuacagucauggcu
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure
-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  gg acuga aucugac aaugac    aug   c
uc  u     c       -      ----   aaa 


Annotation confidence Not enough data
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Genome context
JH422512.1: 165079-165145 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-212a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-212a

Accession MIMAT0042619
Description Neolamprologus brichardi nbr-miR-212a mature miRNA
Sequence 1 - ACCUUGGCUUUAGACUGCUUACU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381