miRBase entry: nbr-mir-3120

Stem-loop nbr-mir-3120


Accession
MI0034514
Description
Neolamprologus brichardi nbr-mir-3120 precursor miRNA


Sequence

cugucugugccugcuguacagguuggaggauauucUGCACAGCAAGUGUAGAUAGGC
((((((((((.((((((.((((.((.....)).)))).)))))).))))))))))..

Structure
--          c      a    u  g 
  cugucugugc ugcugu cagg ug a
  |||||||||| |||||| |||| || g
  GAUAGAUGUG ACGACA GUcu au g
CG          A      C    u  a 


Annotation confidence Not enough data
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Genome context
JH422283.1: 9845277-9845333 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-3120
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-3120

Accession MIMAT0042638
Description Neolamprologus brichardi nbr-miR-3120 mature miRNA
Sequence 36 - UGCACAGCAAGUGUAGAUAGGC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381