miRBase entry: oni-mir-182

Stem-loop oni-mir-182


Accession
MI0034524
Description
Oreochromis niloticus oni-mir-182 precursor miRNA


Sequence

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggugguucuagacuugccaacu
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure
-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  aaccguu   aucuug   guggcc      g
uc       cag      ---      uaggua 


Annotation confidence Not enough data
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Genome context
CM001460.1: 22507670-22507733 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from oni-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-182

Accession MIMAT0042646
Description Oreochromis niloticus oni-miR-182 mature miRNA
Sequence 1 - UUUGGCAAUGGUAGAACUCACA - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774