miRBase entry: oni-mir-199a-1

Stem-loop oni-mir-199a-1

Accession

MI0034531

Description

Oreochromis niloticus oni-mir-199a-1 precursor miRNA

Sequence

cccaguguucagacuaccuguucaggaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-c       u        c   ---    ga 
  ccagugu cagacuac ugu   ucag  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au

Annotation confidence Not enough data

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Genome context

CM001465.1: 13839763-13839822 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-199a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-199a

Accession	MIMAT0042650
Description	Oreochromis niloticus oni-miR-199a mature miRNA
Sequence	40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774