miRBase entry: oni-mir-199a-2

Stem-loop oni-mir-199a-2


Accession
MI0034532
Description
Oreochromis niloticus oni-mir-199a-2 precursor miRNA


Sequence

cccaguguucagacuaccuguucauugucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))..

Structure
-c       u        c   u    guc 
  ccagugu cagacuac ugu cauu   a
  ||||||| |||||||| ||| ||||    
  GGUUACA GUCUGAUG ACA gugg   u
UU       C        -   u    uca 


Annotation confidence Not enough data
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Genome context
GL831264.1: 905753-905812 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from oni-mir-199a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-199a

Accession MIMAT0042650
Description Oreochromis niloticus oni-miR-199a mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774