miRBase entry: oni-mir-199a-4

Stem-loop oni-mir-199a-4


Accession
MI0034542
Description
Oreochromis niloticus oni-mir-199a-4 precursor miRNA


Sequence

cccaguguucagacuaccuguucaucaggcugcagcugaACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.((((((.(........).)))))))))))))).)))))))..

Structure
-c       u        c      u agg 
  ccagugu cagacuac uguuca c   c
  ||||||| |||||||| |||||| |    
  GGUUACA GUCUGAUG ACAagu g   u
UU       C        -      c acg 


Annotation confidence Not enough data
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Genome context
CM001447.1: 16325881-16325940 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-199a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-199a

Accession MIMAT0042650
Description Oreochromis niloticus oni-miR-199a mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774