miRBase entry: oni-mir-100-2

Stem-loop oni-mir-100-2


Accession
MI0034543
Description
Oreochromis niloticus oni-mir-100-2 precursor miRNA


Sequence

AACCCGUAGAUCCGAACUUGUGgugacuggcugcacaagcucguaucuauagguaug
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure
--A   C      C   A      guga 
   ACC GUAGAU CGA CUUGUG    c
   ||| |||||| ||| ||||||    u
   ugg uaucua gcu gaacac    g
gua   a      u   c      gucg 


Annotation confidence Not enough data
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Genome context
CM001453.1: 8884551-8884607 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oni-mir-100-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-100

Accession MIMAT0042654
Description Oreochromis niloticus oni-miR-100 mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774