miRBase entry: oni-let-7a-4

Stem-loop oni-let-7a-4


Accession
MI0034554
Description
Oreochromis niloticus oni-let-7a-4 precursor miRNA

Literature search
4 open access papers mention oni-let-7a-4
(19 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacacugggagauaacuauucaaccuacugucuuucc
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure
--U              U      uuagg   aua    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   uucugucauccaac uaucaa     uag   gggu  
ccu              u      -----   --a    c 


Annotation confidence Not enough data
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Genome context
CM001448.1: 2643829-2643900 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-let-7a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-let-7a

Accession MIMAT0042659
Description Oreochromis niloticus oni-let-7a mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774