miRBase entry: oni-mir-462

Stem-loop oni-mir-462


Accession
MI0034560
Description
Oreochromis niloticus oni-mir-462 precursor miRNA

Literature search
2 open access papers mention oni-mir-462
(8 sentences)

Sequence

UAACGGAACCCAUAAUGCAGCUGugauucugagccccagcugguuaugggguccguuucca
.((((((.((((((((.((((((.(..........))))))))))))))).))))))....

Structure
---U      A        G      u auuc 
    AACGGA CCCAUAAU CAGCUG g    u
    |||||| |||||||| |||||| |     
    uugccu ggguauug gucgac c    g
accu      g        -      - ccga 


Annotation confidence Not enough data
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Genome context
CM001463.1: 31139411-31139471 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-462
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-462

Accession MIMAT0042662
Description Oreochromis niloticus oni-miR-462 mature miRNA
Sequence 1 - UAACGGAACCCAUAAUGCAGCUG - 23
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774