miRBase entry: oni-mir-30c

Stem-loop oni-mir-30c


Accession
MI0034563
Description
Oreochromis niloticus oni-mir-30c precursor miRNA

Literature search
2 open access papers mention oni-mir-30c
(2 sentences)

Sequence

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggccgggagugggacuguuugcacu
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure
--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  acguuugu agg  gugagggccg ugg   c
uc        c   --          g   ucu 


Annotation confidence Not enough data
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Genome context
CM001456.1: 9402811-9402872 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-30c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-30c

Accession MIMAT0042664
Description Oreochromis niloticus oni-miR-30c mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCGGC - 23
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774