miRBase entry: oni-mir-184b

Stem-loop oni-mir-184b


Accession
MI0034564
Description
Oreochromis niloticus oni-mir-184b precursor miRNA


Sequence

uuaucacuuuuccagcccagcuaucuauuaaauguuuguUGGACGGAGAACUGAUAAGGG
((((((.((((((.(.(((((...(........)...))))).))))))).))))))...

Structure
---      c      a c     uau uau 
   uuauca uuuucc g ccagc   c   u
   |||||| |||||| | |||||   |    
   AAUAGU AAGAGG C GGUug   g   a
GGG      C      - A     uuu uaa 


Annotation confidence Not enough data
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Genome context
CM001450.1: 39659041-39659100 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-184b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-184b

Accession MIMAT0042665
Description Oreochromis niloticus oni-miR-184b mature miRNA
Sequence 40 - UGGACGGAGAACUGAUAAGGG - 60
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774