miRBase entry: oni-mir-125a-1

Stem-loop oni-mir-125a-1

Accession

MI0034577

Description

Oreochromis niloticus oni-mir-125a-1 precursor miRNA

Sequence

UCCCUGAGACCCUUAACCUGUGaugauaugaaaggucacaggugagguccuugggaac
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGau    u
  |||| |||  ||||| ||||||||     
  aggg uuc  ggagu ggacacug    g
ca    -   cu     -        gaaa

Annotation confidence Not enough data

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Genome context

CM001464.1: 9145640-9145697 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-125a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-125a

Accession	MIMAT0042676
Description	Oreochromis niloticus oni-miR-125a mature miRNA
Sequence	1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774