miRBase entry: oni-mir-144a

Stem-loop oni-mir-144a

Accession

MI0034581

Description

Oreochromis niloticus oni-mir-144a precursor miRNA

Literature search

1 open access papers mention oni-mir-144a
(7 sentences)

Sequence

GGAUAUCAUCUUAUACUGUAAGUuuauuaaagagacacuacaguauagaugauguacu
..(((((((((.((((((((.((((.......))))..)))))))))))))))))...

Structure

-GG         U        -A    au 
   AUAUCAUCU AUACUGUA  GUuu  u
   ||||||||| ||||||||  ||||  a
   uguaguaga uaugacau  caga  a
uca         -        ca    ga

Annotation confidence Not enough data

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Genome context

GL831331.1: 655264-655321 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-144a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-144a

Accession	MIMAT0042678
Description	Oreochromis niloticus oni-miR-144a mature miRNA
Sequence	1 - GGAUAUCAUCUUAUACUGUAAGU - 23
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774