miRBase entry: oni-mir-125b-1

Stem-loop oni-mir-125b-1

Accession

MI0034583

Description

Oreochromis niloticus oni-mir-125b-1 precursor miRNA

Sequence

UCCCUGAGACCCUAACUUGUGAcguuuugcugugaugugcacggguuggguucuugggagcu
((((.((((.((((((((((((((((.......))))).))))))))))).))))))))...

Structure

---    U    C           -     uu 
   UCCC GAGA CCUAACUUGUG Acguu  g
   |||| |||| ||||||||||| |||||  c
   aggg uucu ggguugggcac uguag  u
ucg    -    u           g     ug

Annotation confidence Not enough data

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Genome context

CM001453.1: 8889805-8889866 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-125b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-125b

Accession	MIMAT0042672
Description	Oreochromis niloticus oni-miR-125b mature miRNA
Sequence	1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774