miRBase entry: oni-mir-16a

Stem-loop oni-mir-16a

Accession

MI0034596

Description

Oreochromis niloticus oni-mir-16a precursor miRNA

Sequence

UAGCAGCACGUAAAUAUUGGCGugugagaauagaccccaaccccaauauuagcagugcugcuu
.((((((((((.((((((((.((.((.(........))))).)))))))).)).)))))))).

Structure

U        -  A        C  g  a aau 
 AGCAGCAC GU AAUAUUGG Gu ug g   a
 |||||||| || |||||||| || || |    
 ucgucgug cg uuauaacc ca ac c   g
u        a  a        c  -  - cca

Annotation confidence Not enough data

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Genome context

CM001457.1: 18537052-18537114 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-16a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-16a

Accession	MIMAT0042687
Description	Oreochromis niloticus oni-miR-16a mature miRNA
Sequence	1 - UAGCAGCACGUAAAUAUUGGCG - 22
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774