miRBase entry: oni-mir-206

Stem-loop oni-mir-206


Accession
MI0034605
Description
Oreochromis niloticus oni-mir-206 precursor miRNA

Literature search
4 open access papers mention oni-mir-206
(15 sentences)

Sequence

acaugcuuccuuauauccccauauuaauacgccacuuaUGGAAUGUAAGGAAGUGUGUGG
((((((((((((((((..(((((.............))))).))))))))))))))))..

Structure
--                cc     uuaau 
  acaugcuuccuuauau  ccaua     a
  ||||||||||||||||  |||||     c
  UGUGUGAAGGAAUGUA  GGUau     g
GG                -A     ucacc 


Annotation confidence Not enough data
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Genome context
CM001458.1: 17340341-17340400 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-206
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-206

Accession MIMAT0042696
Description Oreochromis niloticus oni-miR-206 mature miRNA
Sequence 39 - UGGAAUGUAAGGAAGUGUGUGG - 60
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774