miRBase entry: oni-mir-218b

Stem-loop oni-mir-218b


Accession
MI0034607
Description
Oreochromis niloticus oni-mir-218b precursor miRNA

Literature search
1 open access papers mention oni-mir-218b
(4 sentences)

Sequence

UUGUGCUUGAUCUAACCAUGCAgugcaucuucuguccaugguugugccaagcaccuug
..(((((((...(((((((((((........)))..))))))))...)))))))....

Structure
--UU       AUC        --   ugc 
    GUGCUUG   UAACCAUG  CAg   a
    |||||||   ||||||||  |||    
    cacgaac   guugguac  guc   u
guuc       cgu        cu   uuc 


Annotation confidence Not enough data
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Genome context
CM001450.1: 19615875-19615932 [-]

Database links

Mature oni-miR-218b

Accession MIMAT0042698
Description Oreochromis niloticus oni-miR-218b mature miRNA
Sequence 1 - UUGUGCUUGAUCUAACCAUGCA - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774