miRBase entry: oni-mir-17a-1

Stem-loop oni-mir-17a-1

Accession

MI0034615

Description

Oreochromis niloticus oni-mir-17a-1 precursor miRNA

Literature search

2 open access papers mention oni-mir-17a-1
(2 sentences)

Sequence

CAAAGUGCUUACAGUGCAGGUAguacuauggaauaccuacugcaguggaggcacuuacagc
..(((((((..((.(((((...(((........)))...))))).))..))))))).....

Structure

---CA       UA  G     GUA   cua 
     AAGUGCU  CA UGCAG   gua   u
     |||||||  || |||||   |||    
     uucacgg  gu acguc   cau   g
cgaca       ag  g     auc   aag

Annotation confidence Not enough data

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Genome context

CM001444.1: 7384950-7385010 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-17a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-17a

Accession	MIMAT0042703
Description	Oreochromis niloticus oni-miR-17a mature miRNA
Sequence	1 - CAAAGUGCUUACAGUGCAGGUA - 22
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774