miRBase entry: oni-mir-27e-1

Stem-loop oni-mir-27e-1


Accession
MI0034623
Description
Oreochromis niloticus oni-mir-27e-1 precursor miRNA

Literature search
1 open access papers mention oni-mir-27e-1
(1 sentences)

Sequence

cagagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
..(((((((((((....(((((((..................)))))))..)))))))))))...

Structure
-ca           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc 


Annotation confidence Not enough data
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Genome context
CM001465.1: 19639908-19639972 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oni-mir-27e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-27e

Accession MIMAT0042709
Description Oreochromis niloticus oni-miR-27e mature miRNA
Sequence 45 - UUCACAGUGGCUAAGUUCAGU - 65
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774