miRBase entry: oni-mir-27a

Stem-loop oni-mir-27a


Accession
MI0034624
Description
Oreochromis niloticus oni-mir-27a precursor miRNA

Literature search
1 open access papers mention oni-mir-27a
(1 sentences)

Sequence

aggacuuagcucgcuccgugaacaguucagugaaauccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure
--a         u    cc       guu   u a 
   ggacuuagc cgcu  gugaaca   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c a
CGC         -    --       ---   - u 


Annotation confidence Not enough data
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Genome context
CM001461.1: 14982424-14982486 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from oni-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-27a

Accession MIMAT0042710
Description Oreochromis niloticus oni-miR-27a mature miRNA
Sequence 43 - UUCACAGUGGCUAAGUUCCGC - 63
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774