miRBase entry: oni-mir-19a

Stem-loop oni-mir-19a

Accession

MI0034625

Description

Oreochromis niloticus oni-mir-19a precursor miRNA

Sequence

aguuuugcauaguugcgcugcaagaagaaauaaguUGUGCAAAUCUAUGCAAAACUG
((((((((((((((((((.((............)).))))))..)))))))))))).

Structure

-            --      u  aagaa 
 aguuuugcauag  uugcgc gc     g
 ||||||||||||  |||||| ||      
 UCAAAACGUAUC  AACGUG ug     a
G            UA      U  aauaa

Annotation confidence Not enough data

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Genome context

GL831311.1: 1393234-1393290 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from oni-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-19a

Accession	MIMAT0042711
Description	Oreochromis niloticus oni-miR-19a mature miRNA
Sequence	36 - UGUGCAAAUCUAUGCAAAACUG - 57
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774