miRBase entry: oni-mir-200a

Stem-loop oni-mir-200a

Accession

MI0034626

Description

Oreochromis niloticus oni-mir-200a precursor miRNA

Sequence

caucuuacccgacagugcuggacuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     c       c    cugu  u 
  cauc uuacc gacagug ugga    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u

Annotation confidence Not enough data

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Genome context

GL831308.1: 160022-160083 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-200a

Accession	MIMAT0042712
Description	Oreochromis niloticus oni-miR-200a mature miRNA
Sequence	40 - UAACACUGUCUGGUAACGAUGUU - 62
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774