miRBase entry: oni-mir-24a-1

Stem-loop oni-mir-24a-1

Accession

MI0034656

Description

Oreochromis niloticus oni-mir-24a-1 precursor miRNA

Sequence

ugccuacugagcugauaaucaguccuacagaaucacUGGCUCAGUUCAGCAGGAACAG
..(((.(((((((((...(((((...........))))).))))))))).))).....

Structure

---ug   a         uaa     ccua 
     ccu cugagcuga   ucagu    c
     ||| |||||||||   |||||    a
     GGA GACUUGACU   GGUca    g
GACAA   C         --C     cuaa

Annotation confidence Not enough data

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Genome context

CM001455.1: 20339767-20339824 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-24a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-24a

Accession	MIMAT0042733
Description	Oreochromis niloticus oni-miR-24a mature miRNA
Sequence	37 - UGGCUCAGUUCAGCAGGAACAG - 58
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774