miRBase entry: oni-mir-106

Stem-loop oni-mir-106

Accession

MI0034657

Description

Oreochromis niloticus oni-mir-106 precursor miRNA

Sequence

UAAAGUGCUUACAGUGCAGGUAGugaugauaaucuggccuacugcagugugagcacuucuuuc
..(((((((((((.(((((...(((((....)))..))...))))).))))))))))).....

Structure

---UA           G     GUA  --   g 
     AAGUGCUUACA UGCAG   Gu  gau a
     ||||||||||| |||||   ||  |||  
     uucacgagugu acguc   cg  cua u
cuuuc           g     auc  gu   a

Annotation confidence Not enough data

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Genome context

CM001445.1: 9821145-9821207 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-106

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-106

Accession	MIMAT0042734
Description	Oreochromis niloticus oni-miR-106 mature miRNA
Sequence	1 - UAAAGUGCUUACAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381