miRBase entry: oni-mir-135c

Stem-loop oni-mir-135c


Accession
MI0034681
Description
Oreochromis niloticus oni-mir-135c precursor miRNA


Sequence

UAUGGCUUUUUAUUCCUAUGUGAugaugaaaaguguucAUGUAGGAACAGAAGCCAUUUU
.(((((((((..(((((((((((..((.....))..))))))))))).)))))))))...

Structure
--U         UA           ug  g 
   AUGGCUUUU  UUCCUAUGUGA  au a
   |||||||||  |||||||||||  || a
   UACCGAAGA  AAGGAUGUAcu  ug a
UUU         -C           ug  a 


Annotation confidence Not enough data
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Genome context
CM001450.1: 43728716-43728775 [-]

Database links

Mature oni-miR-135c

Accession MIMAT0042756
Description Oreochromis niloticus oni-miR-135c mature miRNA
Sequence 1 - UAUGGCUUUUUAUUCCUAUGUGA - 23
Evidence experimental
Illumina [1-2]

Mature oni-miR-135c-3p

Accession MIMAT0042757
Description Oreochromis niloticus oni-miR-135c-3p mature miRNA
Sequence 39 - AUGUAGGAACAGAAGCCAUUUU - 60
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774