miRBase entry: oni-mir-218a-1

Stem-loop oni-mir-218a-1


Accession
MI0034694
Description
Oreochromis niloticus oni-mir-218a-1 precursor miRNA

Literature search
1 open access papers mention oni-mir-218a-1
(4 sentences)

Sequence

UUGUGCUUGAUCUAACCAUGUGacugccagguuccuaucguggaacaugguucuuucaagcaccaug
..((((((((...((((((((..((((..(((....))))))).))))))))...))))))))....

Structure
--UU        UCU        Ga    ca   u 
    GUGCUUGA   AACCAUGU  cugc  ggu c
    ||||||||   ||||||||  ||||  |||  
    cacgaacu   uugguaca  ggug  cua c
guac        uuc        -a    --   u 


Annotation confidence Not enough data
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Genome context
CM001449.1: 18443096-18443162 [-]

Database links

Mature oni-miR-218a

Accession MIMAT0042679
Description Oreochromis niloticus oni-miR-218a mature miRNA
Sequence 1 - UUGUGCUUGAUCUAACCAUGUG - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774