miRBase entry: oni-mir-23a-2

Stem-loop oni-mir-23a-2


Accession
MI0034699
Description
Oreochromis niloticus oni-mir-23a-2 precursor miRNA


Sequence

gguuccuggcaccgugauuugaugcacaaagagaaacaaaaAUCACAUUGCCAGGGAUUUCCA
.((((((((((..(((((((...................)))))))..)))))))))).....

Structure
----g          cc       gaugcaca 
     guuccuggca  gugauuu        a
     ||||||||||  |||||||        a
     UAGGGACCGU  CACUAaa        g
ACCUU          UA       aacaaaga 


Annotation confidence Not enough data
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Genome context
CM001465.1: 19639277-19639339 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oni-mir-23a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-23a

Accession MIMAT0042769
Description Oreochromis niloticus oni-miR-23a mature miRNA
Sequence 42 - AUCACAUUGCCAGGGAUUUCCA - 63
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774