miRBase entry: oni-mir-429b

Stem-loop oni-mir-429b

Accession

MI0034709

Description

Oreochromis niloticus oni-mir-429b precursor miRNA

Literature search

1 open access papers mention oni-mir-429b
(1 sentences)

Sequence

gucuuaccagacaugguuagauguaauuauuggugucUAAUACUGUCUGGUAAUGCCGU
((.((((((((((..(((((((............)))))))..)))))))))).))...

Structure

---  c          ug       guaau 
   gu uuaccagaca  guuagau     u
   || ||||||||||  |||||||      
   CG AAUGGUCUGU  UAAUcug     a
UGC  U          CA       ugguu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

GL831308.1: 161417-161475 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-429b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-429b

Accession	MIMAT0042772
Description	Oreochromis niloticus oni-miR-429b mature miRNA
Sequence	38 - UAAUACUGUCUGGUAAUGCCGU - 59
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774