miRBase entry: oni-mir-29a-1

Stem-loop oni-mir-29a-1


Accession
MI0034719
Description
Oreochromis niloticus oni-mir-29a-1 precursor miRNA

Literature search
3 open access papers mention oni-mir-29a-1
(18 sentences)

Sequence

accguuuuccucugguguucagaguuuccaucaugucUAGCACCAUUUGAAAUCGGUUA
((((.((((...(((((((.(((............))))))))))...)))).))))..

Structure
--    u    cuc       c   guuuc 
  accg uuuc   ugguguu aga     c
  |||| ||||   ||||||| |||      
  UGGC AAAG   ACCACGA Ucu     a
AU    U    UUU       -   guacu 


Annotation confidence Not enough data
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Genome context
CM001448.1: 29992805-29992863 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-29a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-29a

Accession MIMAT0042765
Description Oreochromis niloticus oni-miR-29a mature miRNA
Sequence 38 - UAGCACCAUUUGAAAUCGGUUA - 59
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774