miRBase entry: oni-mir-731

Stem-loop oni-mir-731


Accession
MI0034728
Description
Oreochromis niloticus oni-mir-731 precursor miRNA


Sequence

AAUGACACGUUUUCUCCCGGAUUGcugcgagcaggaaacgcaaccgggaauuucgugucagcc
..(((((((.....((((((.((((..(......)....))))))))))....)))))))...

Structure
-AA       UUUUC      A    --ug ga 
   UGACACG     UCCCGG UUGc    c  g
   |||||||     |||||| ||||    |   
   acugugc     agggcc aacg    g  c
ccg       -uuua      -    caaa ga 


Annotation confidence Not enough data
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Genome context
CM001463.1: 31138896-31138958 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-731
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-731

Accession MIMAT0042781
Description Oreochromis niloticus oni-miR-731 mature miRNA
Sequence 1 - AAUGACACGUUUUCUCCCGGAUUG - 24
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774