miRBase entry: oni-mir-181b

Stem-loop oni-mir-181b


Accession
MI0034729
Description
Oreochromis niloticus oni-mir-181b precursor miRNA

Literature search
2 open access papers mention oni-mir-181b
(3 sentences)

Sequence

AACAUUCAUUGCUGUCGCUGGGUuggacuguguagaaaagcucacugaacaaugagugcaac
..(((((((((...(((.((((((...((....))...)))))).))).)))))))))....

Structure
--AA         CUG   C      gga  g 
    CAUUCAUUG   UCG UGGGUu   cu u
    |||||||||   ||| ||||||   ||  
    gugaguaac   agu acucga   ga g
caac         --a   c      aaa  u 


Annotation confidence Not enough data
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Genome context
CM001461.1: 8793414-8793475 [+]

Database links

Mature oni-miR-181b

Accession MIMAT0042782
Description Oreochromis niloticus oni-miR-181b mature miRNA
Sequence 1 - AACAUUCAUUGCUGUCGCUGGGU - 23
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774