miRBase entry: oni-mir-15b

Stem-loop oni-mir-15b

Accession

MI0034731

Description

Oreochromis niloticus oni-mir-15b precursor miRNA

Sequence

UAGCAGCGCAUCAUGGUUUGAaacaauguggaaaaggugcgaaccauaauuugcugcuuua
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))...

Structure

--U       C  C        Aa  aa gu 
   AGCAGCG AU AUGGUUUG  ac  u  g
   ||||||| || ||||||||  ||  |   
   ucgucgu ua uaccaagc  ug  a  g
auu       u  a        -g  ga aa

Annotation confidence Not enough data

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Genome context

CM001457.1: 18536826-18536886 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-15b

Accession	MIMAT0042785
Description	Oreochromis niloticus oni-miR-15b mature miRNA
Sequence	1 - UAGCAGCGCAUCAUGGUUUGA - 21
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774