miRBase entry: oni-mir-24b

Stem-loop oni-mir-24b

Accession

MI0034734

Description

Oreochromis niloticus oni-mir-24b precursor miRNA

Sequence

UGCCUACUGAACUGGUAUCAGUguuacaccugaaaacUGGCUCAGUUCAGCAGGAACag
..(((.(((((((((..(((((.............))))).))))))))).))).....

Structure

---UG   A         UA     guuac 
     CCU CUGAACUGG  UCAGU     a
     ||| |||||||||  |||||     c
     GGA GACUUGACU  GGUca     c
gaCAA   C         -C     aaagu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM001465.1: 19640768-19640826 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-24b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-24b-5p

Accession	MIMAT0042788
Description	Oreochromis niloticus oni-miR-24b-5p mature miRNA
Sequence	1 - UGCCUACUGAACUGGUAUCAGU - 22
Evidence	experimental Illumina [1-2]

Mature oni-miR-24b-3p

Accession	MIMAT0042789
Description	Oreochromis niloticus oni-miR-24b-3p mature miRNA
Sequence	38 - UGGCUCAGUUCAGCAGGAAC - 57
Evidence	experimental Illumina [2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774