miRBase entry: oni-mir-194b

Stem-loop oni-mir-194b


Accession
MI0034737
Description
Oreochromis niloticus oni-mir-194b precursor miRNA

Literature search
1 open access papers mention oni-mir-194b
(9 sentences)

Sequence

UGUAACAGCAUCUCCAUAUGGAaaaacuguggcuuccaguggagcugcuguuaucug
.(((((((((.((((((.(((((..........))))))))))).)))))))))...

Structure
--U         U      A     aaac 
   GUAACAGCA CUCCAU UGGAa    u
   ||||||||| |||||| |||||     
   uauugucgu gaggug accuu    g
guc         c      -     cggu 


Annotation confidence Not enough data
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Genome context
CM001445.1: 14802423-14802479 [+]

Database links

Mature oni-miR-194b

Accession MIMAT0042792
Description Oreochromis niloticus oni-miR-194b mature miRNA
Sequence 1 - UGUAACAGCAUCUCCAUAUGGA - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774