miRBase entry: oni-mir-23c

Stem-loop oni-mir-23c

Accession

MI0034738

Description

Oreochromis niloticus oni-mir-23c precursor miRNA

Sequence

ugugucucuggcaagaugauuugguccacaaaguugaaAUCACAUUGCCAGAGAUUACUG
.(((((((((((((..((((((.(..........).))))))..)))))))))).)))..

Structure

-u   -          ga      g ucca 
  gug ucucuggcaa  ugauuu g    c
  ||| ||||||||||  |||||| |     
  CAU AGAGACCGUU  ACUAaa u    a
GU   U          AC      g ugaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM001450.1: 30914902-30914961 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-23c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-23c

Accession	MIMAT0042793
Description	Oreochromis niloticus oni-miR-23c mature miRNA
Sequence	39 - AUCACAUUGCCAGAGAUUACUG - 60
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774