miRBase entry: oni-mir-216a

Stem-loop oni-mir-216a

Accession

MI0034742

Description

Oreochromis niloticus oni-mir-216a precursor miRNA

Literature search

1 open access papers mention oni-mir-216a
(3 sentences)

Sequence

AAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucucacaauggccucugggauuaug
.((((((((..(((...((((((..((.........)).))))))...))).))))))))...

Structure

--A        CU   AAC      uc  uca 
   AAUCUCAG  GGC   UGUGAg  gu   c
   ||||||||  |||   ||||||  ||   u
   uuaggguc  ccg   acacuc  cg   a
gua        -u   gua      -u  ucg

Annotation confidence Not enough data

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Genome context

CM001456.1: 20187028-20187090 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-216a

Accession	MIMAT0042796
Description	Oreochromis niloticus oni-miR-216a mature miRNA
Sequence	1 - AAAUCUCAGCUGGCAACUGUGA - 22
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774