miRBase entry: oni-mir-18b

Stem-loop oni-mir-18b

Accession

MI0034746

Description

Oreochromis niloticus oni-mir-18b precursor miRNA

Sequence

UAAGGUGCAUCUAGUGUAGUUagugaaguauucaaagucuacugcccuaguugccccuucugu
.((((.(((.((((.(((((...((((...))))......))))).)))).))).))))....

Structure

---U    U   U    U     ---Uag    g 
    AAGG GCA CUAG GUAGU      ugaa  
    |||| ||| |||| |||||      |||| u
    uucc cgu gauc cguca      acuu  
uguc    c   u    c     ucugaa    a

Annotation confidence Not enough data

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Genome context

CM001449.1: 27554497-27554559 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-18b

Accession	MIMAT0042799
Description	Oreochromis niloticus oni-miR-18b mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGUAGUU - 21
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774