miRBase entry: oni-mir-457

Stem-loop oni-mir-457

Accession

MI0034751

Description

Oreochromis niloticus oni-mir-457 precursor miRNA

Sequence

UAGCAGCACAUCAUUACUGGUAuuucuuuucacugcauuaccaguauguuaugugcugcuuca
.((((((((((...((((((((...(........)...))))))))....))))))))))...

Structure

--U          -CAU        uuu uuu 
   AGCAGCACAU    UACUGGUA   c   u
   ||||||||||    ||||||||   |    
   ucgucgugua    augaccau   g   c
acu          uugu        uac uca

Annotation confidence Not enough data

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Genome context

CM001446.1: 926096-926158 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-457

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-457

Accession	MIMAT0042804
Description	Oreochromis niloticus oni-miR-457 mature miRNA
Sequence	1 - UAGCAGCACAUCAUUACUGGUA - 22
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774