miRBase entry: oni-mir-19c

Stem-loop oni-mir-19c


Accession
MI0034755
Description
Oreochromis niloticus oni-mir-19c precursor miRNA


Sequence

aguuuugauggcuugcucucagcuucugaaagacucugcUGUGCAAAUCCAUGCAAAGCUCU
(((((((((((.((((...((((..............)))).))))..)))).)))))))..

Structure
--       -    -c    ucu    uucuga 
  aguuuug augg  uugc   cagc      a
  ||||||| ||||  ||||   ||||       
  UCGAAAC UACC  AACG   GUcg      a
UC       G    UA    --U    ucucag 


Annotation confidence Not enough data
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Genome context
CM001449.1: 27553256-27553317 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-19c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-19c

Accession MIMAT0042808
Description Oreochromis niloticus oni-miR-19c mature miRNA
Sequence 40 - UGUGCAAAUCCAUGCAAAGCUCU - 62
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774