miRBase entry: oni-mir-219a

Stem-loop oni-mir-219a


Accession
MI0034759
Description
Oreochromis niloticus oni-mir-219a precursor miRNA


Sequence

UGAUUGUCCAAACGCAAUUCUUGugaaauuucaaauccaacccgAGAAUUGUGCCUGGACAUCUGU
.(((.(((((..((((((((((((((....))).........)))))))))))..))))))))...

Structure
--U   U     AA           ---------   a 
   GAU GUCCA  CGCAAUUCUUG         uga a
   ||| |||||  |||||||||||         |||  
   CUA CAGGU  GUGUUAAGAgc         acu u
UGU   -     CC           ccaaccuaa   u 


Annotation confidence Not enough data
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Genome context
CM001455.1: 29502993-29503058 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-219a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-219a-5p

Accession MIMAT0042814
Description Oreochromis niloticus oni-miR-219a-5p mature miRNA
Sequence 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
Evidence experimental
Illumina [2]

Mature oni-miR-219a-3p

Accession MIMAT0042815
Description Oreochromis niloticus oni-miR-219a-3p mature miRNA
Sequence 45 - AGAAUUGUGCCUGGACAUCUGU - 66
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774