miRBase entry: oni-mir-99a

Stem-loop oni-mir-99a


Accession
MI0034761
Description
Oreochromis niloticus oni-mir-99a precursor miRNA

Literature search
1 open access papers mention oni-mir-99a
(4 sentences)

Sequence

AGACCUGUAGAUACAAGCUUGUggugucacuuaacacaaguucggaucuacggguuu
.((((((((((..(.((((((((...........)))))))).)..)))))))))).

Structure
A          UA A        gugu 
 GACCUGUAGA  C AGCUUGUg    c
 ||||||||||  | ||||||||    a
 uugggcaucu  g uugaacac    c
u          ag c        aauu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM001457.1: 402009-402065 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from oni-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-99a

Accession MIMAT0042818
Description Oreochromis niloticus oni-miR-99a mature miRNA
Sequence 1 - AGACCUGUAGAUACAAGCUUGU - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774