miRBase entry: oni-mir-449a

Stem-loop oni-mir-449a


Accession
MI0034770
Description
Oreochromis niloticus oni-mir-449a precursor miRNA


Sequence

AGGCAGUGUCUUGUUAGCUGGUaguuucuuccugucccagcucaccugcugcugcccuc
.(((((((.(..((.(((((((((.......)))..)))))).))..).)))))))...

Structure
--A       U UU  U      --   uu 
   GGCAGUG C  GU AGCUGG  Uag  u
   ||||||| |  || ||||||  |||  c
   ccgucgu g  ca ucgacc  guc  u
cuc       c uc  c      cu   cu 


Annotation confidence Not enough data
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Genome context
CM001455.1: 25967806-25967864 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oni-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-449a

Accession MIMAT0042832
Description Oreochromis niloticus oni-miR-449a mature miRNA
Sequence 1 - AGGCAGUGUCUUGUUAGCUGGU - 22
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381

  2. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774