miRBase entry: oni-mir-3120-1

Accession

MI0034773

Description

Oreochromis niloticus oni-mir-3120-1 precursor miRNA

Sequence

CUGUCUGUGCCUGCUGUACAGGuuggaggauauucUGCACAGCAAGUGUAGAUAGGC
((((((((((.((((((.((((.((.....)).)))).)))))).))))))))))..

Structure

--          C      A    u  g 
  CUGUCUGUGC UGCUGU CAGG ug a
  |||||||||| |||||| |||| || g
  GAUAGAUGUG ACGACA GUcu au g
CG          A      C    u  a

Annotation confidence Not enough data

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Genome context

GL831264.1: 903930-903986 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-3120-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0042835
Description	Oreochromis niloticus oni-miR-3120-5p mature miRNA
Sequence	1 - CUGUCUGUGCCUGCUGUACAGG - 22
Evidence	experimental Illumina [2]

Accession	MIMAT0042836
Description	Oreochromis niloticus oni-miR-3120-3p mature miRNA
Sequence	36 - UGCACAGCAAGUGUAGAUAGGC - 57
Evidence	experimental Illumina [1-2]

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774