miRBase entry: oni-mir-10573a

Stem-loop oni-mir-10573a

Accession

MI0034775

Description

Oreochromis niloticus oni-mir-10573a precursor miRNA

Sequence

aacuccauuccucgaaggccggugucaugcaacuuuuccaUGCCCUCGAGGACUGGAGUUU
(((((((.(((((((.(((.((...............))..))).))))))).))))))).

Structure

-       u       a   -c  ugucau 
 aacucca uccucga ggc  gg      g
 ||||||| ||||||| |||  ||      c
 UUGAGGU AGGAGCU CCG  cc      a
U       C       C   Ua  uuuuca

Annotation confidence Not enough data

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Genome context

AERX01077620.2: 274-334 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10573a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-10573a

Accession	MIMAT0042838
Description	Oreochromis niloticus oni-miR-10573a mature miRNA
Sequence	41 - UGCCCUCGAGGACUGGAGUUU - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381