miRBase entry: oni-mir-10553

Stem-loop oni-mir-10553

Accession

MI0034776

Description

Oreochromis niloticus oni-mir-10553 precursor miRNA

Sequence

GUGCCAUAUCUGACUGUACGCAauuguauuauucuauugcguuaucagcgauauagcaaug
.(((.(((((.(.(((.(((((((.(.......).)))))))...))))))))).)))...

Structure

--G   C     U A   --U       u ua 
   UGC AUAUC G CUG   ACGCAau g  u
   ||| ||||| | |||   ||||||| |  u
   acg uauag c gac   ugcguua c  a
gua   a     - -   uau       u uu

Annotation confidence Not enough data

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Genome context

GL831414.1: 209594-209654 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10553

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-10553

Accession	MIMAT0042839
Description	Oreochromis niloticus oni-miR-10553 mature miRNA
Sequence	1 - GUGCCAUAUCUGACUGUACGCA - 22
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774